never in taxon
PMID:17921072
tooth SubClassOf 'never in taxon' value 'Aves'
?X DisjointWith RO_0002162 some ?Y
Chris Mungall
PMID:20973947
x never in taxon T if and only if T is a class, and x does not instantiate the class expression "in taxon some T". Note that this is a shortcut relation, and should be used as a hasValue restriction in OWL.
shorthand
imported from
part of
part_of
has part
has_part
inheres in
inheres_in
inheres_in
is bearer of
bearer of
bearer_of
participates in
participates_in
participates_in
connected to
David Osumi-Sutherland
X connected_to Y if and only if X and Y share a fiat boundary.
has component
For use in recording has_part with a cardinality constraint.
develops from
Chris Mungall
Melissa Haendel
David Osumi-Sutherland
Terry Meehan
This is the transitive form of the develops from relation
x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y
entity
continuant
occurrent
An entity that has temporal parts and that happens, unfolds or develops through time. Sometimes also called perdurants.
a surgical operation as processual context for a nosocomical infection
occurrent
perdurant
the life of an organism
the most interesting part of Van Gogh's life
the spatiotemporal context occupied by a process of cellular meiosis
the spatiotemporal region occupied by the development of a cancer tumor
independent continuant
process
A processual entity that is a maximally connected spatiotemporal whole and has bona fide beginnings and endings corresponding to real discontinuities.
process
the life of an organism
the process of cell-division
the process of sleeping
material entity
anatomical structure
material anatomical entity
cell component
multi-cell-component structure
neuron projection bundle
multicellular anatomical structure
cell
neuron
habitat
A spatial region having environmental qualities which may sustain an organism or a community of organisms.
membrane
axon
dendrite
presynaptic membrane
cell projection
neuron projection
synapse part
cell part
synapse
postsynaptic membrane
Evidence code for matrix is IVS
Characters:
(26) author does not use "posterior margin" in describing location of process, but see Fig. 9
Evidence code for matrix is IVS
Characters:
(26) author does not use "posterior margin" in describing location of process, but see Fig. 9
Hydrolycus armatus
91342
91343
32607
55904
43295-36
91344
Gilbertolus atratoensis
expanded generic coding (WD 9/8/2008)
1924.3.346–48
present
Third postcleithrum
Third postcleithrum: 1. absent 2. present
absent
present
Posterodorsal foramen in coracoid
Posterodorsal foramen in coracoid: 1. very enlarged 2. absent or if present not enlarged as in 1
very enlarged
absent or if present not enlarged as in 1
Coracoids
Coracoids: 1. expanded 2. not expanded
expanded
not expanded
Coracoids
Coracoids: 1. not fused or corrugated 2. fused and having a corrugated pattern
not fused or corrugated
with a short medial, vertically aligned process at its posterior edge that extends along posterior surface of ventral wing of lateral ethmoid
fused and having a corrugated pattern
Mesocoracoid
Mesocoracoid: 1. enlarged, with broad articular surfaces with cleithrum and coracoid, its dorsal tip reaching midlength of vertical portion of cleithrum 2. small, its dorsal tip reaching midlength of vertical portion of cleithrum
enlarged, with broad articular surfaces with cleithrum and coracoid, its dorsal tip reaching midlength of vertical portion of cleithrum
small, its dorsal tip reaching midlength of vertical portion of cleithrum
Articulation of scapula with medial surface of cleithrum
Articulation of scapula with medial surface of cleithrum: 1. shifted posteriorly with scapular foramen exposed in lateral view 2. not shifted posteriorly with scapular foramen covered by cleithrum
shifted posteriorly with scapular foramen exposed in lateral view
not shifted posteriorly with scapular foramen covered by cleithrum
Anterior portion of cleithrum articulating with anterior margin of coracoid
Anterior portion of cleithrum articulating with anterior margin of coracoid: 1. forming a vertically elongate process with its anterodorsal tip pointed 2. forming a vertically elongate process with its anterodorsal portion forming a continuous curve 3. not ending in a distinct process
forming a vertically elongate process with its anterodorsal tip pointed
forming a vertically elongate process with its anterodorsal portion forming a continuous curve
Acestrorhynchus falcatus
expanded generic coding (WD 9/8/2008)
43418
4572-91
not ending in a distinct process
Pelvic-fin insertion
Pelvic-fin insertion: 1. at ventral profile of abdomen 2. dorsally, far from theventral profile of abdomen
at ventral profile of abdomen
dorsally, far from theventral profile of abdomen
Branched anal-fin rays
Branched anal-fin rays: 1. 60 or less 2. more than 60
60 or less
more than 60
Hypurals
Hypurals: 1. hypurals 1–3 fused into a single unit 2. hypurals 2–3 fused into a single unit 3. hypural fan consisting of six separate hypural elements
hypurals 1–3 fused into a single unit
hypurals 2–3 fused into a single unit
hypural fan consisting of six separate hypural elements
with enlarged medial, vertically aligned process at its posterior edge that extends along posterior surface of ventral wing of lateral ethmoid
Anteromedial branch of anterior epineural
Anteromedial branch of anterior epineural: 1. contacting neural complex of Weberian apparatus 2. not contacting neural complex of Weberian apparatus
contacting neural complex of Weberian apparatus
not contacting neural complex of Weberian apparatus
Myorhabdoi
Myorhabdoi: 1. absent 2. present
absent
present
Acestrorhynchus falcirostris
expanded generic coding (WD 9/8/2008)
20592
Scales
Scales: 1. cycloid 2. with serrations on exposed portion
cycloid
with serrations on exposed portion
Fringelike appendices along lateral surface of posterior chamber of gasbladder
Fringelike appendices along lateral surface of posterior chamber of gasbladder: 1. absent 2. present
absent
present
Mesethmoid spine
Mesethmoid spine: 1. further expanded 2. dorsoventrally developed, almost round in shape 3. conical, or with a different type of elaboration of its anterior portion
Acestrorhynchus heterolepis
expanded generic coding (WD 9/8/2008)
93088
further expanded
dorsoventrally developed, almost round in shape
Acestrorhynchus lacustris
expanded generic coding (WD 9/8/2008)
27893
Acestrorhynchus microlepis
expanded generic coding (WD 9/8/2008)
40106
conical, or with a different type of elaboration of its anterior portion
Acestrorhynchus nasutus
expanded generic coding (WD 9/8/2008)
29268
Ventral process of mesethmoid
Ventral process of mesethmoid: 1. present 2. absent
present
Outgroup
absent
Orientation of ventral processes of mesethmoid
Orientation of ventral processes of mesethmoid: 1. ventrally oriented 2. anteriorly oriented
ventrally oriented
Cynodon sp.
93103
93079
32485
anteriorly oriented
Hydrolycus sp.
56518
56541
40122
56540
40048
Vomer-mesethmoid contact
Vomer-mesethmoid contact: 1. anterior surface of vomer without contact with posterior surface of ventral processes of mesethmoid 2. anterior surface of vomer contacting posterior surface of ventral processes of mesethmoid
anterior surface of vomer without contact with posterior surface of ventral processes of mesethmoid
Hydrolycus tatauaia
32632
32630
Anostomus anostomus
43354
anterior surface of vomer contacting posterior surface of ventral processes of mesethmoid
Diverging lamellae of the mesethmoid
Diverging lamellae of the mesethmoid: 1. well developed 2. reduced
well developed
Laemolyta taeniata
39992
reduced
Portion of diverging lamellae of mesethmoid that contacts lateral surface of vomer
Portion of diverging lamellae of mesethmoid that contacts lateral surface of vomer: 1. covering only upper anterior corner of the lateral surface of vomer 2. covering most of lateral surface of vomer
Acanthocharax microlepis
1971.10.17:1444-1460
covering only upper anterior corner of the lateral surface of vomer
covering most of lateral surface of vomer
Acestrocephalus sardina
29241
74567
Articular surface on lateral wing of mesethmoid
Articular surface on lateral wing of mesethmoid: 1. present 2. absent
present
absent
Agoniates sp.
34332
Ventral crest of vomer
Ventral crest of vomer: 1. present 2. absent
present
Brycon falcatus
54976
absent
Lateral arms of vomer
Lateral arms of vomer: 1. gradually reducing anteriorly extending just until posterior half of its extension (only posterior portion of vomer is an inverted Y in cross section) 2. continuous all the way to its anterior portion, almost proximate to articulation with mesethmoid (vomer is an inverted Y in cross section along its entire extension)
gradually reducing anteriorly extending just until posterior half of its extension (only posterior portion of vomer is an inverted Y in cross section)
Chalceus macrolepidotus
40059
Charax pauciradiatus
20552
continuous all the way to its anterior portion, almost proximate to articulation with mesethmoid (vomer is an inverted Y in cross section along its entire extension)
Galeocharax knerii
10542–55
Vomer-palatine contact
Vomer-palatine contact: 1. anterior portion of palatine with a cartilaginous surface contacting a cartilaginous surface at posterior portion of main body of vomer 2. articulation between vomer and palatine made through cartilaginous surface at other portions of these ossifications
anterior portion of palatine with a cartilaginous surface contacting a cartilaginous surface at posterior portion of main body of vomer
Gnathocharax sp.
6819
articulation between vomer and palatine made through cartilaginous surface at other portions of these ossifications
Portion on vomer for articulation of maxilla
Portion on vomer for articulation of maxilla: 1. presence of a shallow depression on its anterolateral surface where anterior tip of maxilla abuts 2. not modified in 1
presence of a shallow depression on its anterolateral surface where anterior tip of maxilla abuts
Hydrolycus wallacei
32638
Heterocharax sp.
29226
not modified in 1
Hoplocharax goethei
7136–7263
Ridge on lateral surface of vomer
Ridge on lateral surface of vomer: 1. present 2. absent
present
Hydrocynus sp.
231542
88854
absent
Iguanodectes spilurus
40033
Rhinosphenoid
Rhinosphenoid: 1. present 2. absent
present
absent
Lonchogenys ilisha
29265
Lateral ethmoid-orbitosphenoid contact
Lateral ethmoid-orbitosphenoid contact: 1. absent 2. present
absent
Mylossoma sp.
77395
present
Parasphenoid and main portion of orbitosphenoid
Parasphenoid and main portion of orbitosphenoid: 1. well separated 2. close to each other
well separated
Oligosarcus argenteus
37257
close to each other
state 2 present in matrix but not in publication character list
Roeboexodon gyanensis
not found? ; guyanensis misspelled in pub
36587
Dilatator fossa
Dilatator fossa: 1. highly developed, extending anteriorly on dorsal surface of frontal beyond dorsoposterior edge of orbit 2. not extending anteriorly on dorsal surface of frontal or if so, only to dorsoposterior edge of orbit
highly developed, extending anteriorly on dorsal surface of frontal beyond dorsoposterior edge of orbit
Roeboides sp.
40198
not extending anteriorly on dorsal surface of frontal or if so, only to dorsoposterior edge of orbit
Roeboides paranensis
19830
Frontal shelf at posterodorsal edge of orbit
Frontal shelf at posterodorsal edge of orbit: 1. reduced 2. absent 3. well developed
reduced
absent
Hydrolycus scomberoides
26177
32093
40087
Serrasalmus sp.
77781
well developed
Triportheus sp.
73052
Dorsal portion of sphenotic spine
Dorsal portion of sphenotic spine: 1. contacting ventrolateral margin of frontal 2. not in contact with ventrolateral margin of frontal
contacting ventrolateral margin of frontal
Caenotropus maculosus
14338
not in contact with ventrolateral margin of frontal
Anterior shelf of frontal
Anterior shelf of frontal: 1. laterally expanded 2. lacking 3. ventrally expanded and truncated posteriorly 4. ventrally expanded with straight margin 5. ventrally expanded with curved margin
laterally expanded
Boulengerella cuvieri
24162
lacking
ventrally expanded and truncated posteriorly
Ctenolucius beani
11244
Distichodus fasciolatus
5888
ventrally expanded with straight margin
Ichthyborus besse
57429
ventrally expanded with curved margin
Ichthyborus quadrilineatus
57408
Third posttemporal fossa bordered by epioccipital and exoccipital
Third posttemporal fossa bordered by epioccipital and exoccipital: 1. present 2. absent
present
Xenocharax spilurus
80-51-P-610-614
absent
Dorsal posttemporal fossa
Dorsal posttemporal fossa: 1. present 2. absent
present
Erythrinus erythrinus
34350
absent
Neurocranium-first vertebra joint
Neurocranium-first vertebra joint: 1. portion of basioccipital at neurocranium-vertebral joint flared posteriorly and forming a receptacle for first vertebra 2. portion of basioccipital at neurocranium-vertebral joint not flared posteriorly
portion of basioccipital at neurocranium-vertebral joint flared posteriorly and forming a receptacle for first vertebra
Rhaphiodon vulpinus
uncataloged
1935.6.4:33-39
43295-64
32812
231549
Hoplias cf. malabaricus
32372
portion of basioccipital at neurocranium-vertebral joint not flared posteriorly
Hyomandibula
Hyomandibula: 1. with a process, separate from main body of hyomandibula 2. shaft of bone contacting preopercle without a process
with a process, separate from main body of hyomandibula
Hoplerythrinus unitaeniatus
34347
shaft of bone contacting preopercle without a process
Gasteropelecus sternicla
57446
Symplectic
Symplectic: 1. posterior portion extending dorsally to distinctly fit into a roofed over groove in medial face of lower arm of hyomandibula 2. without posterior process contacting hyomandibula or if such a process contacts hyomandibula, it does not fit into a roofed over groove
posterior portion extending dorsally to distinctly fit into a roofed over groove in medial face of lower arm of hyomandibula
Carnegiella strigata
74606
without posterior process contacting hyomandibula or if such a process contacts hyomandibula, it does not fit into a roofed over groove
Metapterygoid teeth
Metapterygoid teeth: 1. present 2. absent
present
Hepsetus odoe
303782
304407
absent
Mesopterygoid teeth
Mesopterygoid teeth: 1. present 2. absent
Lebiasina bimaculata
5360
present
absent
Pyrrhulina sp.
23134
Ectopterygoid teeth
Ectopterygoid teeth: 1. very small, arranged in a patch covering most or all surface of ectopterygoid 2. absent or not as in 1
very small, arranged in a patch covering most or all surface of ectopterygoid
Piabucina uruyensis
not found?; CoF placed in genus Lebiasina (WD 9/8/2008)
91110
absent or not as in 1
Prochilodus rubrotaeniatus
54845
Ectopterygoid-metapterygoid contact
Ectopterygoid-metapterygoid contact: 1. present 2. absent
present
Hemiodus sp.
40105
absent
Ectopterygoid-mesethmoid contact
Ectopterygoid-mesethmoid contact: 1. absent 2. present
absent
Cynodon gibbus
32857
32593
43295-89
Fifth infraorbital
Fifth infraorbital: 1. greatly reduced, with posteroventral margin of sixth infraorbital in contact with posterodorsal margin of fourth infraorbital 2. well developed, without contact between fourth and sixth infraorbitals
present
Branchiostegal rays
Branchiostegal rays: 1. five rays 2. three or four rays
greatly reduced, with posteroventral margin of sixth infraorbital in contact with posterodorsal margin of fourth infraorbital
five rays
three or four rays
Posterior ceratohyal
Posterior ceratohyal: 1. with two attached branchiostegal rays 2. with one attached branchiostegal ray
with two attached branchiostegal rays
with one attached branchiostegal ray
Lower jaw
Lower jaw: 1. dentary with one canine of moderate to large size relatively more developed than remaining teeth 2. dentary with no developed canines or if canines developed not with one canine conspicuously more developed than others 3. dentary with a highly developed canine
dentary with one canine of moderate to large size relatively more developed than remaining teeth
dentary with no developed canines or if canines developed not with one canine conspicuously more developed than others
dentary with a highly developed canine
Foramen in anterior portion of snout for dentary canine
Foramen in anterior portion of snout for dentary canine: 1. delimited anteriorly and laterally by the premaxilla, posteriorly and posteromedially by ascending process of maxilla and anteromedially by vomer- mesethmoid, with ascending process of maxilla passing posterior to dentary canine 2. not as in 1
delimited anteriorly and laterally by the premaxilla, posteriorly and posteromedially by ascending process of maxilla and anteromedially by vomer- mesethmoid, with ascending process of maxilla passing posterior to dentary canine
not as in 1
Cynodon septenarius
5415
32585
Replacement tooth trenches
Replacement tooth trenches: 1. shallow, open replacement trenches with teeth in mandibular replacement trench horizontally aligned, tip of replacement teeth projecting posteriorly 2. not as in 1
shallow, open replacement trenches with teeth in mandibular replacement trench horizontally aligned, tip of replacement teeth projecting posteriorly
not as in 1
well developed, without contact between fourth and sixth infraorbitals
Gill-rakers along leading portion of first ceratobranchial
Gill-rakers along leading portion of first ceratobranchial: 1. all short, flattened, tooth-bearing bony plates 2. all elongate (teeth present or absent), or only the most anterior ones as in state 1
all short, flattened, tooth-bearing bony plates
all elongate (teeth present or absent), or only the most anterior ones as in state 1
Spines on free upper edge of gill-rakers of first ceratobranchial
Spines on free upper edge of gill-rakers of first ceratobranchial: 1. considerably larger than those on surface 2. only slightly larger than remaining spines on gill-raker, but never prominent as in state 1
considerably larger than those on surface
only slightly larger than remaining spines on gill-raker, but never prominent as in state 1
Anterior portion of first hypobranchial
Anterior portion of first hypobranchial: 1. anteroventrally prolonged, into a prong-shaped process extending from ventrolateral margin of its main body 2. unelaborated
anteroventrally prolonged, into a prong-shaped process extending from ventrolateral margin of its main body
unelaborated
Anterior portion of first ceratobranchial
Anterior portion of first ceratobranchial: 1. slightly dorsally directed, forming an angle relative to its longitudinal axis 2. dorsally directed portion of first ceratobranchial relatively longer and angle more pronounced than in 1 3. straight, not forming an angle relative to longitudinal axis of remaining portion of that ossification
slightly dorsally directed, forming an angle relative to its longitudinal axis
dorsally directed portion of first ceratobranchial relatively longer and angle more pronounced than in 1
straight, not forming an angle relative to longitudinal axis of remaining portion of that ossification
Ventral processes on first centrum
Ventral processes on first centrum: 1. absent 2. present
absent
present
Roestes ogilviei
expanded generic coding (WD 9/8/2008)
9702
Contact between neural complex of Weberian apparatus and posterior margin of neurocranium
Contact between neural complex of Weberian apparatus and posterior margin of neurocranium: 1. present 2. absent
present
Antorbital-lateral ethmoid contact
Antorbital-lateral ethmoid contact: 1. antorbital contacting ventral wing of lateral ethmoid along its entire lateral edge 2. no contact
absent
Transverse process of second vertebra
Transverse process of second vertebra: 1. very developed, with distal bifurcation 2. absent
very developed, with distal bifurcation
antorbital contacting ventral wing of lateral ethmoid along its entire lateral edge
absent
Lateral process of second centrum
Lateral process of second centrum: 1. dorsoventrally expanded with two short processes at articular surface at its distal end 2. dorsoventrally flat and with no processes as in 1 3. triangular-shaped flat sheet of bone, from a dorsal view, extending laterally and posteriorly under tripus 4. single structure extending laterally
dorsoventrally expanded with two short processes at articular surface at its distal end
dorsoventrally flat and with no processes as in 1
triangular-shaped flat sheet of bone, from a dorsal view, extending laterally and posteriorly under tripus
single structure extending laterally
Lateral process of third centrum
Lateral process of third centrum: 1. originating ventral to transverse process of second vertebra that is in contact with transverse process of third neural arch 2. absent 3. originating posterior to transverse process of second vertebra that is in contact with transverse process of third neural arch
originating ventral to transverse process of second vertebra that is in contact with transverse process of third neural arch
absent
originating posterior to transverse process of second vertebra that is in contact with transverse process of third neural arch
no contact
Bladelike portion of tripus
Bladelike portion of tripus: 1. not elongate 2. anteriorly elongate
not elongate
anteriorly elongate
Roestes molossus
expanded generic coding (WD 9/8/2008)
11068
Transformator process of tripus
Transformator process of tripus: 1. thin curved process with no modifications at its median end 2. distal portion of process forming a 90 degree angle with anterior portion, and ending in enlarged rectangular bony plate
thin curved process with no modifications at its median end
distal portion of process forming a 90 degree angle with anterior portion, and ending in enlarged rectangular bony plate
Fourth pleural rib+parapophysis
Fourth pleural rib+parapophysis: 1. platelike lateral process 2. with enlarged distal end forming a basal plate
platelike lateral process
with enlarged distal end forming a basal plate
Process on posteroventral portion of fourth centrum attached by ligament to process on anterior portion of fifth centrum
Process on posteroventral portion of fourth centrum attached by ligament to process on anterior portion of fifth centrum: 1. present 2. absent
present
absent
Process on anteroventral portion of fifth vertebra
Process on anteroventral portion of fifth vertebra: 1. present 2. greatly developed 3. absent
present
Antorbital
Antorbital: 1. flat, platelike, without medial process 2. with a short medial, vertically aligned process at its posterior edge that extends along posterior surface of ventral wing of lateral ethmoid 3. with enlarged medial, vertically aligned process at its posterior edge that extends along posterior surface of ventral wing of lateral ethmoid
greatly developed
flat, platelike, without medial process
absent
Fifth pleural rib
Fifth pleural rib: 1. not as in 1 2. relatively very short, with two processes on flattened proximal portion, one medially and other posteriorly directed, distal portion very slender
not as in 1
relatively very short, with two processes on flattened proximal portion, one medially and other posteriorly directed, distal portion very slender
Parapophysis of precaudal vertebrae
Parapophysis of precaudal vertebrae: 1. articulating with anterior vertebra 2. not articulating with anterior vertebra
articulating with anterior vertebra
not articulating with anterior vertebra
Baudelot’s ligament
Baudelot’s ligament: 1. connected to lateral process of second vertebra 2. not connected to lateral process of second vertebra
connected to lateral process of second vertebra
not connected to lateral process of second vertebra
Second postcleithrum
Second postcleithrum: 1. absent 2. present
absent